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SherLoc

Important notes:  This version is outdated. You probably should use the new SherLoc2
Choose prediction method:


Sequence id (optional):
null


Sequence (Paste your amino acid sequence in one letter code):


OR


Submit a fasta file containing sequences (maximum 20 entries):



Select an E-Value for BLAST:

Output format:
    Simple: Only top predicted localization with final score (probability estimate)

    Advanced: Top 3 predicted localizations with final scores as well as detailed results of the subprediction methods


 

 

Reference

Shatkay, H, Höglund, A, Brady, S, Blum, T, Dönnes, P, and Kohlbacher, O (2007).
SherLoc: High-Accuracy Prediction of Protein Subcellular Localization by Integrating Text and Protein Sequence Data.
Bioinformatics, 23(11):1410-1417.

Höglund, A, Blum, T, Brady, S, Dönnes, P, Miguel, JS, Rocheford, M, Kohlbacher, O, and Shatkay, H (2006).
Significantly improved prediction of subcellular localization by integrating text and protein sequence data
In: Proceedings of the Pacific Symposium on Biocomputing (PSB 2006), PSB