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Sebastian Briesemeister
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Sebastian Briesemeister

Sand 14, Room C323
Work: +49-7071-29-70462

Biography:

  • since 2008, PhD Student in the group of Oliver Kohlbacher at the Department of Computer Science, Eberhard Karls University Tuebingen, Germany
  • 2007, Diploma thesis - Weighted Cluster Editing for Clustering Biological Data - supervised by Prof. Sebastian Böcker, University of Jena, Germany
  • 2005-2006, Visiting student at University of York, England, MRes Bioinformatics course
  • 2002-2007, Student at Friedrich-Schiller University Jena, Germany, Bioinformatics (Diploma)
  • 1993-2001, Goethe-Gymnasium Ilmenau, Germany

Research Interest:

  • protein subcellular location prediction
  • epitope prediction (EpiToolKit)
  • Bayesian learning methods

  • interpretable machine learning

  • protein structure modeling

  • fixed-parameter algorithms in Bioinformatics

Publications:

2011

Böcker, S, Briesemeister, S, and Klau, GW (2011).
Exact Algorithms for Cluster Editing: Evaluation and Experiments
Algorithmica, 60(2):316-334.

2010

Briesemeister, S, Rahnenführer, J, and Kohlbacher, O (2010).
YLoc – an interpretable web server for predicting subcellular localization
Nucl. Acids Res., 38:W497-W502.

Briesemeister, S, Rahnenführer, J, and Kohlbacher, O (2010).
Going from where to why - interpretable prediction of protein subcellular localization
Bioinformatics, 26(9):1232-1238.

Kirchler, T, Briesemeister, S, Singer, M, Schütze, K, Keinath, M, Kohlbacher, O, Vicente-Carbajosa, J, Teige, M, Harter, K, and Chaban, C (2010).
The role of phosphorylatable serine residues in the DNA-binding domain of Arabidopsis bZIP transcription factors
Eur. J. Cell Biol., 89(2-3):175-183.

2009

Briesemeister, S, Blum, T, Brady, S, Lam, Y, Kohlbacher, O, and Shatkay, H (2009).
SherLoc2: a high-accuracy hybrid method for predicting subcellular localization of proteins
J. Proteome Res., 8(11):5363–5366.

Blum, T, Briesemeister, S, and Kohlbacher, O (2009).
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction
BMC Bioinformatics, 10:274.

Böcker, S, Briesemeister, S, Bui, QB, and Truss, A (2009).
Going Weighted: Parameterized Algorithms for Cluster Editing
Theoretical Computer Science, 410(52):5467-5480.

Böcker, S, Briesemeister, S, and Klau, GW (2009). 
On Optimal Comparability Editing with Applications to Molecular Diagnostics
BMC Bioinformatics, 10(Suppl 1):S61.

2008

Böcker, S, Briesemeister, S, Bui, QB, and Truss, A (2008).
Going Weighted: Parameterized Algorithms for Cluster Editing
In: Proc. of Conference on Combinatorial Optimization and Applications (COCOA 2008),volume 5165, pp. 1-12, Lect. Notes Comput. Sc., Springer.

Böcker, S, Briesemeister, S, and Klau, GW (2008).
Exact Algorithms for Cluster Editing: Evaluation and Experiments
In: Proc. of Workshop on Experimental Algorithms (WEA 2008), pp. 289–302, Springer.

Böcker, S, Briesemeister, S, Bui, QB, and Truss, A (2008).
A fixed-parameter approach for Weighted Cluster Editing
In: Proc. of Asia-Pacific Bioinformatics Conference (APBC 2008), volume 5, pp. 211-220, Imperial College Press.

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